Evaluation studies:

Toxtree Mendeley group

If you have used Toxtree, or performed an evaluation of a Toxtree module, please add your publication to the Mendeley group

Toxtree 1.20

Cramer rules

Patlewicz, 2008
Patlewicz G, Jeliazkova N, Safford RJ, Worth AP, Aleksiev B. (2008) An evaluation of the implementation of the Cramer classification scheme in the Toxtree software. SAR QSAR Environ Res. ;19(5-6):495-524. PubMed

Toxtree 1.60

Verhaar scheme

Enoch 2008
Enoch SJ, Hewitt M, Cronin MT, Azam S, Madden JC., Classification of chemicals according to mechanism of aquatic toxicity: an evaluation of the implementation of the Verhaar scheme in Toxtree. Chemosphere. 2008 Sep;73(3):243-8. Epub 2008 Aug 9. PubMed

Structure Alerts for the in vivo micronucleus assay in rodents

Benigni 2010
Romualdo Benigni, Cecilia Bossa and Andrew Worth, Structural analysis and predictive value of the rodent in vivo micronucleus assay results, Mutagenesis (2010) 25 (4): 335-341.

Benigni/ Bossa rulebase (for mutagenicity and cancerogenicity)

Mombelli 2010
Mombelli E, Devillers J., Evaluation of the OECD (Q)SAR Application Toolbox and Toxtree for predicting and profiling the carcinogenic potential of chemicals.,SAR QSAR Environ Res. 2010 Oct;21(7-8):731-52. PubMed
Devillers 2010a
Devillers J, Mombelli E., Evaluation of the OECD QSAR Application Toolbox and Toxtree for estimating the mutagenicity of chemicals. Part 1. Aromatic amines.,SAR QSAR Environ Res. 2010 Oct;21(7-8):753-69. PubMed
Devillers 2010b
Devillers J, Mombelli E. Evaluation of the OECD QSAR Application Toolbox and Toxtree for estimating the mutagenicity of chemicals. Part 2. 91-92 unsaturated aliphatic aldehydes.,SAR QSAR Environ Res. 2010 Oct;21(7-8):771-83. PubMed
Hillebrecht 2011
Hillebrecht A, Muster W, Brigo A, Kansy M, Weiser T, Singer T.,Comparative evaluation of in silico systems for ames test mutagenicity prediction: scope and limitations.,Chem Res Toxicol. 2011 Jun 20;24(6):843-54. Epub 2011 May 2. PubMed